2024

NanoLSI Papers

Article

  • Abo, M; Imamura, K; Hosogi, S; Kobayashi, T; Takeda, Y; Kase, K; Koba, H; Watanabe, S; Ohkura, N; Hara, J; Yano, S
    “Comparing region of interest selection and whole-field analysis for measurement of ciliary beat frequency in high-speed video analysis”
    RESPIRATORY INVESTIGATION, 62(3)
    DOI: 10.1016/j.resinv.2024.02.016
  • Akine, S; Nakano, M; Sakata, Y; Yano, S
    “Preferential Formation of Three-layered Host-Guest Complexes of a Planar Dinuclear Metallohost with Alkali Metal Ions”
    CHEMISTRY-A EUROPEAN JOURNAL, 30(71)
    DOI: 10.1002/chem.202403071
  • Akter, L; Flechsig, H; Marchesi, A; Franz, CM
    “Observing Dynamic Conformational Changes within the Coiled-Coil Domain of Different Laminin Isoforms Using High-Speed Atomic Force Microscopy”
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 25(4)
    DOI: 10.3390/ijms25041951
  • Alam, MS; Penedo, M; Sumikama, T; Miyazawa, K; Hirahara, K; Fukuma, T
    “Revealing the Mechanism Underlying 3D-AFM Imaging of Suspended Structures by Experiments and Simulations”
    SMALL METHODS
    DOI: 10.1002/smtd.202400287
  • Amyot, R; Kodera, N; Flechsig, H
    “Atom Filtering Algorithm and GPU-Accelerated Calculation of Simulation Atomic Force Microscopy Images”
    ALGORITHMS, 17(1)
    DOI: 10.3390/a17010038
  • Baba, H; Fujita, T; Mizuno, K; Tambo, M; Toda, S
    “Programming Spatial Cell Sorting by Engineering Cadherin Intracellular Activity”
    ACS SYNTHETIC BIOLOGY, 13(6)
    DOI: 10.1021/acssynbio.3c00774
  • Baba, T; Tomaru, U; Hirao, A; Mukaida, N; Johmura, Y
    “Autophagy Inhibition–induced Cytosolic DNA Check for updates Sensing Combined with Differentiation Therapy Induces Irreversible Myeloid Differentiation in Leukemia Cells”
    CANCER RESEARCH COMMUNICATIONS, 4(3)
    DOI: 10.1158/2767-9764.CRC-23-0507
  • Bereta, M; Teplan, M; Zakar, T; Vuviet, H; Cifra, M; Chafai, DE
    “Biological autoluminescence enables effective monitoring of yeast cell electroporation”
    BIOTECHNOLOGY JOURNAL, 19(4)
    DOI: 10.1002/biot.202300475
  • Biyani, M; Sharma, K; Shoei, M; Akashi, H; Nakano, M; Nakajima, M; Biyani, M
    “A novel aptamer-antibody sandwich electrochemical sensor for detecting ADAR1 in complex biological samples”
    BIOSENSORS AND BIOELECTRONICS: X, 19(-)
    DOI: 10.1016/j.biosx.2024.100491
  • Carlero, D; Fukuda, S; Bocanegra, R; Ando, T; Martin-Benito, J; Ibarra, B
    “Conformational Dynamics of Influenza A Virus Ribonucleoprotein Complexes during RNA Synthesis”
    ACS NANO, 18(30)
    DOI: 10.1021/acsnano.4c01362
  • Chen, C; Yurtsever, A; Li, PY; Sun, LH
    “Two-Dimensional Layered Nanomaterials Steering Self-Assembly of Dodecapeptides with Three Building Blocks”
    ACS APPLIED MATERIALS & INTERFACES, 16(15)
    DOI: 10.1021/acsami.3c18851
  • Chida, K; Yoshii, T; Kawaguchi, R; Inoue, M; Tani, F; Sobue, T; Ohtani, S; Kato, K; Ogoshi, T; Nakahata, S; Kamiya, K; Nishihara, H
    “Rational bottom-up synthesis of sulphur-rich porous carbons for single-atomic platinum catalyst supports”
    GREEN CHEMISTRY, 26(15)
    DOI: 10.1039/d4gc02055c
  • Cho, K; Li, ZZ; MacLachlan, MJ
    “Growth of Metal Organic Frameworks on the Surface of Individual Cellulose Nanocrystals”
    CRYSTAL GROWTH & DESIGN, 24(4)
    DOI: 10.1021/acs.cgd.3c01462
  • Das Gupta, M; Patrick, BO; Reid, JP; MacLachlan, MJ
    “Benzene-1,3,5-tricarboxamide Metal Complexes Self-Assembled in Nanofibers: Implications for Bimetallic Catalytic Nanomaterials”
    ACS APPLIED NANO MATERIALS, 7(13)
    DOI: 10.1021/acsanm.4c01485
  • Datta, A; Beta, C; Großmann, R
    “Random walks of intermittently self-propelled particles”
    PHYSICAL REVIEW RESEARCH, 6(4)
    DOI: 10.1103/PhysRevResearch.6.043281
  • Fuchigami, T; Nakayama, T; Miyanari, Y; Nozaki, I; Ishikawa, N; Tagawa, A; Yoshida, S; Munekane, M; Nakayama, M; Ogawa, K
    “Peptide-Based Turn-On Fluorescent Probes for Highly Specific Detection of Survivin Protein in the Cancer Cells”
    CHEMICAL AND BIOMEDICAL IMAGING, 2(5)
    DOI: 10.1021/cbmi.4c00017
  • Fukuda, K; Takeuchi, S; Arai, S; Nanjo, S; Sato, S; Kotani, H; Kita, K; Nishiyama, A; Sakaguchi, H; Ohtsubo, K; Yano, S
    “Targeting WEE1 enhances the antitumor effect of KRAS-mutated non-small cell lung cancer TP53 mutations”
    CELL REPORTS MEDICINE, 5(6)
    DOI: 10.1016/j.xcrm.2024.101578
  • Hall, D
    “Equations describing semi-confluent cell growth (I) Analytical approximations”
    BIOPHYSICAL CHEMISTRY, 307
    DOI: 10.1016/j.bpc.2024.107173
  • Hashiba, S; Nakano, M; Yokoseki, I; Takahashi, E; Kondo, M; Jimbo, Y; Ishiguro, N; Arakawa, H; Fukami, T; Nakajima, M
    “Cytochrome P450 and UDP-Glucuronosyltransferase Expressions, Activities, and Induction Abilities in 3D-Cultured Human Renal Proximal Tubule Epithelial CellsS S”
    DRUG METABOLISM AND DISPOSITION, 52(9)
    DOI: 10.1124/dmd.124.001685
  • Hayashi, S; Kawaguchi, H; Watanabe, T; Miyawaki, I; Fukami, T; Nakajima, M
    “Prediction of combination effect of quinidine on the pharmacokinetics of tipepidine using a physiologically based pharmacokinetic model”
    XENOBIOTICA, 54(3)
    DOI: 10.1080/00498254.2024.2304129
  • Himeoka, Y; Horiguchi, S.A; Kobayashi, T.J
    “Theoretical basis for cell deaths”
    PHYSICAL REVIEW RESEARCH, 6(4)
    DOI: 10.1103/PhysRevResearch.6.043217
  • Hirata, K; Omi, JI; Taniguchi, D; Miyazawa, K; Komatsu, F; Takahashi, Y; Fukuma, T
    “Corrosion Inspection for Hard Disk Media with Carbon-Based Overcoats by In-Liquid Open-Loop Electric Potential Microscopy”
    ACS APPLIED MATERIALS & INTERFACES, 16(50)
    DOI: 10.1021/acsami.4c14138
  • Hirayasu, K; Khor, SS; Kawai, Y; Shimada, M; Omae, Y; Hasegawa, G; Hashikawa, Y; Tanimoto, H; Ohashi, J; Hosomichi, K; Tajima, A; Nakamura, H; Nakamura, M; Tokunaga, K; Hanayama, R; Nagasaki, M
    “Identification of the hybrid gene LILRB5-3 by long-read sequencing and implication of its novel signaling function”
    FRONTIERS IN IMMUNOLOGY, 15
    DOI: 10.3389/fimmu.2024.1398935
  • Homma, H; Ngo, KX; Yoshioka, Y; Tanaka, H; Inotsume, M; Fujita, K; Ando, T; Okazawa, H
    “PQBP3/NOL7 is an intrinsically disordered protein”
    BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 736
    DOI: 10.1016/j.bbrc.2024.150453
  • Hori, A; Toyoura, S; Fujiwara, M; Taniguchi, R; Kano, Y; Yamano, T; Hanayama, R; Nakayama, M
    “MHC class I-dressing is mediated via phosphatidylserine recognition and is enhanced by polyI:C”
    ISCIENCE, 27(5)
    DOI: 10.1016/j.isci.2024.109704
  • Iida, N; Muranaka, Y; Park, JW; Sekine, S; Copeland, NG; Jenkins, NA; Shiraishi, Y; Oshima, M; Takeda, H
    “Sleeping Beauty transposon mutagenesis in mouse intestinal organoids identifies genes involved in tumor progression and metastasis”
    CANCER GENE THERAPY, 31(4)
    DOI: 10.1038/s41417-023-00723-x
  • Inaki, M; Higashi, T; Okuda, S; Matsuno, K
    “Distinct cellular and junctional dynamics independently regulate the rotation and elongation of the embryonic gut in Drosophila”
    PLOS GENETICS, 20(10)
    DOI: 10.1371/journal.pgen.1011422
  • Ishibashi, K; Ichinose, T; Kadokawa, R; Mizutani, R; Iwabuchi, S; Togi, S; Ura, H; Tange, S; Shinjo, K; Nakayama, J; Nanjo, S; Niida, Y; Kondo, Y; Hashimoto, S; Sahai, E; Yano, S; Nakada, M; Hirata, E
    “Astrocyte-induced mGluR1 activates human lung cancer brain metastasis via glutamate-dependent stabilization of EGFR”
    DEVELOPMENTAL CELL, 59(5)
    DOI: 10.1016/j.devcel.2024.01.010
  • Ishibashi, K; Liu, TY; Ishizaki, Y; Nagano, S; Yoshida, J; Ono, S; Takahashi, Y; Kumatani, A; Yabu, H
    “Crystalline Formation Enhances Hydrogen Evolution Reaction Property of Copper Azaphthalocyanine on Carbon Electrodes”
    ACS APPLIED ENERGY MATERIALS, 7(22)
    DOI: 10.1021/acsaem.4c02102
  • Ishii, S; Kakizuka, T; Park, SJ; Tagawa, A; Sanbo, C; Tanabe, H; Ohkawa, Y; Nakanishi, M; Nakai, K; Miyanari, Y
    “Genome-wide ATAC-see screening identifies TFDP1 as a modulator of global chromatin accessibility”
    NATURE GENETICS, 56(3)
    DOI: 10.1038/s41588-024-01658-1
  • Ishizaki, T; Tanaka, D; Ishibashi, K; Takahashi, K; Hirata, E; Kuroda, K
    “Cell Damage Mechanisms during Cryopreservation in a Zwitterion Solution and Its Alleviation by DMSO”
    JOURNAL OF PHYSICAL CHEMISTRY B, 128(16)
    DOI: 10.1021/acs.jpcb.3c07773
  • Jestilä, JS; Wu, N; Priante, F; Foster, AS
    “Accelerated Lignocellulosic Molecule Adsorption Structure Determination”
    JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 20(5)
    DOI: 10.1021/acs.jctc.3c01292
  • Kameya, N; Sakai, I; Saito, K; Hamabe-Horiike, T; Shinmyo, Y; Nakada, M; Okuda, S; Kawasaki, H
    “Evolutionary changes leading to efficient glymphatic circulation in the mammalian brain”
    NATURE COMMUNICATIONS, 15(1)
    DOI: 10.1038/s41467-024-54372-1
  • Kaneda, M; Zhang, W; Liu, Z; Gao, Y; Maruyama, M; Nakanishi, Y; Nakajo, H; Aoki, S; Honda, K; Ogawa, T; Hashimoto, K; Endo, T; Aso, K; Chen, T; Oshima, Y; Yamada-Takamura, Y; Takahashi, Y; Okada, S; Kato, T; Miyata, Y
    “Nanoscrolls of Janus Monolayer Transition Metal Dichalcogenides”
    ACS NANO, 18(4)
    DOI: 10.1021/acsnano.3c05681
  • Kaneda, T; Kato, K; Ohtani, S; Ogoshi, T
    “Pillar[5]arenes decorated with six-membered-ring aromatics at all the substitution positions”
    CHEMICAL SCIENCE, 15(27)
    DOI: 10.1039/d4sc01042f
  • Kaneda, T; Kato, K; Ohtani, S; Ogoshi, T
    “Incorporation of ESIPT into pillar[5]arene for solid-state dual emission responsive to n-hexane vapor”
    BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN, 97(10)
    DOI: 10.1093/bulcsj/uoae093
  • Kato, K; Iwano, R; Tokuda, S; Yasuzawa, K; Gon, M; Ohtani, S; Furukawa, S; Tanaka, K; Ogoshi, T
    “Circularly polarized luminescence from a common alkoxy pillar[5]arene and its co-aggregates with π-conjugated rods”
    AGGREGATE, 5(3)
    DOI: 10.1002/agt2.482
  • Kato, K; Tanaka, K; Okada, S; Kaneda, T; Ohtani, S; Ogoshi, T
    “Twist along Central C-C Bonds in a Series of Fully π-Fused Propellanes”
    CHEMISTRY-A EUROPEAN JOURNAL, 30(68)
    DOI: 10.1002/chem.202402828
  • Kato, K; Uchida, Y; Kaneda, T; Tachibana, T; Ohtani, S; Ogoshi, T
    “Alkoxylated Fluoranthene-Fused [3.3.3]Propellanes: Facile Film Formation against High π-Core Content”
    CHEMISTRY-AN ASIAN JOURNAL, 19(8)
    DOI: 10.1002/asia.202400080
  • Kato, Y; Uto, T; Ishizaki, T; Tanaka, D; Ishibashi, K; Matsuda, Y; Onoda, I; Kobayashi, A; Hazawa, M; Wong, RW; Takahashi, K; Hirata, E; Kuroda, K
    “Optimization of Zwitterionic Polymers for Cell Cryopreservation”
    MACROMOLECULAR BIOSCIENCE, 24(7)
    DOI: 10.1002/mabi.202300499
  • Kesornsit, S; Taniguchi, T; Nozaki, M; Nishimura, T; Maeda, K
    “Synthesis of a symmetrically meta-substituted poly(diphenylacetylene) bearing chiral amide groups and its application as a chiral stationary phase for high-performance liquid chromatography”
    CHEMISTRY LETTERS, 53(7)
    DOI: 10.1093/chemle/upae129
  • Kobayashi, H; Shiba, T; Yoshida, T; Bolidong, D; Kato, K; Sato, Y; Mochizuki, M; Seto, T; Kawashiri, S; Hanayama, R
    “Precise analysis of single small extracellular vesicles using flow cytometry”
    SCIENTIFIC REPORTS, 14(1)
    DOI: 10.1038/s41598-024-57974-3
  • Koga, N; Kawashima, K; Ito, C; Nishida, T; Fukuyoshi, S; Saito, Y; Miyake, K; Amuti, S; Rahim, A; Najib, A; Alam, G; Mizokami, A; Tanaka, N; Nakagawa-Goto, K
    “Spiro-meroterpenoids, Syzygioblanes D-H, Isolated from Indonesian Medicinal Plant Syzygium oblanceolatum”
    JOURNAL OF NATURAL PRODUCTS, 87(12)
    DOI: 10.1021/acs.jnatprod.4c01154
  • Kono, Y; Pack, C.-G; Ichikawa, T; Komatsubara, A; Adam, S.A; Miyazawa, K; Rolas, L; Nourshargh, S; Medalia, O; Goldman, R.D; Fukuma, T; Kimura, H; Shimi, T
    “Roles of the lamin A-specific tail region in the localization to sites of nuclear envelope rupture”
    PNAS NEXUS, 3(12)
    DOI: 10.1093/pnasnexus/pgae527
  • Kotani, H; Oshima, H; Boucher, JC; Yamano, T; Sakaguchi, H; Sato, S; Fukuda, K; Nishiyama, A; Yamashita, K; Ohtsubo, K; Takeuchi, S; Nishiuchi, T; Oshima, M; Davila, ML; Yano, S
    “Dual inhibition of SUMOylation and MEK conquers MYC-expressing KRAS-mutant cancers by accumulating DNA damage”
    JOURNAL OF BIOMEDICAL SCIENCE, 31(1)
    DOI: 10.1186/s12929-024-01060-3
  • Kozakai, T; Nakajima, A; Miyazawa, K; Sasaki, Y; Odamaki, T; Katoh, T; Fukuma, T; Xiao, JZ; Suzuki, T; Katayama, T; Sakanaka, M
    “An improved temperature-sensitive shuttle vector system for scarless gene deletion in human-gut-associated Bifidobacterium species”
    ISCIENCE, 27(11)
    DOI: 10.1016/j.isci.2024.111080
  • Kumatani, A; Miura, C; Ida, H; Takahashi, Y; Ikuhara, Y; Shiku, H; Matsue, T; Okada, T
    “Comprehensive electrochemical imaging analyses of redox activities correlated to multilayer graphene and graphite structures”
    ELECTROCHIMICA ACTA, 499
    DOI: 10.1016/j.electacta.2024.144688
  • Kurki, L; Oinonen, N; Foster, AS
    “Automated Structure Discovery for Scanning Tunneling Microscopy”
    ACS NANO, 18(17)
    DOI: 10.1021/acsnano.3c12654
  • Lei, XL; Yamamoto, D; Kitamura, H; Kita, K; Inaki, N; Murakami, K; Nakayama, M; Oshima, H; Oshima, M
    “Neutral selection and clonal expansion during the development of colon cancer metastasis”
    JOURNAL OF BIOCHEMISTRY, 176(3)
    DOI: 10.1093/jb/mvae044
  • Li, DL; Silveira, OJ; Matsuda, T; Hayashi, H; Maeda, H; Foster, AS; Kawai, S
    “On-Surface Synthesis of Triaza[5]triangulene through Cyclodehydrogenation and its Magnetism”
    ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 63(45)
    DOI: 10.1002/anie.202411893
  • Li, PY; Chen, C; Yurtsever, A; Wu, SJ; Sun, LH
    “Structural Ordering of Interfacially Assembled Silk Fibroin-Like Peptides via Robust Intermolecular Hydrogen-Bonding Networks”
    ACS MATERIALS LETTERS, 6(9)
    DOI: 10.1021/acsmaterialslett.4c01045
  • Li, YF; Hirayasu, K; Hasegawa, G; Tomita, Y; Hashikawa, Y; Hiwa, R; Arase, H; Hanayama, R
    “Fibrinogen induces inflammatory responses via the immune activating receptor LILRA2”
    FRONTIERS IN IMMUNOLOGY, 15
    DOI: 10.3389/fimmu.2024.1435236
  • Li, ZZ; Co, S; Tsang, K; Drummond, JG; Martinez, DM; Hamad, WY; Jiang, F; Maclachlan, MJ
    “When cellulose nanocrystals meet graphene oxide: Structurally enhanced aerogels for efficient solar steam generation and water purification”
    CHEMICAL ENGINEERING JOURNAL, 499
    DOI: 10.1016/j.cej.2024.156166
  • Liu, YX; Wang, RX; Chen, QMX; Chang, Y; Chen, Q; Fukumoto, K; Wang, BX; Yu, JC; Luo, CF; Ma, JY; Chen, XX; Murayama, Y; Umeda, K; Kodera, N; Harada, Y; Sekine, S; Li, JF; Tadakuma, H
    “Organ-Specific Gene Expression Control Using DNA Origami-Based Nanodevices”
    NANO LETTERS, 24(27)
    DOI: 10.1021/acs.nanolett.4c02104
  • Matsumoto, K; Ikliptikawati, DK; Makiyama, K; Mochizuki, K; Tobita, M; Kobayashi, I; Voon, DCC; Lim, K; Ogawa, K; Kashiwakura, I; Suzuki, H; Yoshino, H; Wong, RW; Hazawa, M
    “Phase-separated super-enhancers confer an innate radioresistance on genomic DNA”
    JOURNAL OF RADIATION RESEARCH, 65(4)
    DOI: 10.1093/jrr/rrae044
  • Miyasaka, S; Izumi, K; Okuda, S; Miki, Y
    “Numerical assessment of the applicability of geometry-based force inference on homogeneous and heterogeneous cells”
    PLOS ONE, 19(4)
    DOI: 10.1371/journal.pone.0299016
  • Miyata, K; Adachi, K; Miyashita, N; Miyazawa, K; Foster, AS; Fukuma, T
    “High-Speed Three-Dimensional Scanning Force Microscopy Visualization of Subnanoscale Hydration Structures on Dissolving Calcite Step Edges”
    NANO LETTERS, 24(35)
    DOI: 10.1021/acs.nanolett.4c02368
  • Mizuno, K; Hirashima, T; Toda, S
    “Robust tissue pattern formation by coupling morphogen signal and cell adhesion”
    EMBO REPORTS, 25(11)
    DOI: 10.1038/s44319-024-00261-z
  • Mohammed, TO; Lin, YR; Akter, L; Weissenbruch, K; Ngo, KX; Zhang, YJ; Kodera, N; Bastmeyer, M; Miyanari, Y; Taoka, A; Franz, CM
    “S100A11 promotes focal adhesion disassembly via myosin II-driven contractility and Piezo1-mediated Ca2+entry”
    JOURNAL OF CELL SCIENCE, 137(2)
    DOI: 10.1242/jcs.261492
  • Morimoto, K; Yamada, T; Hirai, S; Katayama, Y; Fukui, S; Sawada, R; Tachibana, Y; Matsui, Y; Nakamura, R; Ishida, M; Kawachi, H; Kunimasa, K; Sasaki, T; Nishida, M; Furuya, N; Watanabe, S; Shiotsu, S; Nishioka, N; Horinaka, M; Sakai, T; Uehara, H; Yano, S; Son, BK; Tokuda, S; Takayama, K
    “AXL signal mediates adaptive resistance to KRAS G12C inhibitors in KRAS G12C-mutant tumor cells”
    CANCER LETTERS, 587
    DOI: 10.1016/j.canlet.2024.216692
  • Morimoto, M; Fujimura, Y; Kawakatsu, T; Kida, N; Asakawa, H
    “Silica nanoparticle-membrane interactions investigated by atomic force microscopy in an organic solvent”
    COLLOIDS AND SURFACES A-PHYSICOCHEMICAL AND ENGINEERING ASPECTS, 683
    DOI: 10.1016/j.colsurfa.2023.132858
  • Morioka, S; Oishi, T; Hatazawa, S; Kakuta, T; Ogoshi, T; Umeda, K; Kodera, N; Kurumizaka, H; Shibata, M
    “High-Speed Atomic Force Microscopy Reveals the Nucleosome Sliding and DNA Unwrapping/Wrapping Dynamics of Tail-less Nucleosomes”
    NANO LETTERS, 24(17)
    DOI: 10.1021/acs.nanolett.4c00801
  • Muratsugu, S; Sawaguchi, K; Shiraogawa, T; Chiba, S; Sakata, Y; Shirai, S; Baba, H; Ehara, M; Akine, S; Tada, M
    “Induced chirality at the surface: fixation of a dynamic M/P invertible helical Co3 complex on SiO2”
    CHEMICAL COMMUNICATIONS, 60(15)
    DOI: 10.1039/d3cc05534e
  • Nakamura, R; Yamada, T; Tokuda, S; Morimoto, K; Katayama, Y; Matsui, Y; Hirai, S; Ishida, M; Kawachi, H; Sawada, R; Tachibana, Y; Osoegawa, A; Horinaka, M; Sakai, T; Yasuhiro, T; Kozaki, R; Yano, S; Takayama, K
    “Triple combination therapy comprising osimertinib, an AXL inhibitor, and an FGFR inhibitor improves the efficacy of EGFR-mutated non-small cell lung cancer”
    CANCER LETTERS, 598
    DOI: 10.1016/j.canlet.2024.217124
  • Nakanishi, Y; Kanda, N; Aizaki, M; Hirata, K; Takahashi, Y; Endo, T; Lin, YC; Senga, R; Suenaga, K; Aoyagi, S; Maruyama, M; Gao, YL; Okada, S; Miyata, Y; Liu, Z
    “Superatomic Layer of Cubic Mo4S4 Clusters Connected by Cl Cross-Linking”
    ADVANCED MATERIALS, 36(39)
    DOI: 10.1002/adma.202404249
  • Nakashima, S; Fukami, T; Kudo, T; Nakano, M; Matsui, A; Ishiguro, N; Nakajima, M
    “Iminium ion metabolites are formed from nintedanib by human CYP3A4”
    DRUG METABOLISM AND PHARMACOKINETICS, 57
    DOI: 10.1016/j.dmpk.2024.101025
  • Ngo, KX; Vu, HT; Umeda, K; Trinh, MN; Kodera, N; Uyeda, T
    “Deciphering the actin structure-dependent preferential cooperative binding of cofilin”
    ELIFE, 13
    DOI: 10.7554/eLife.95257
  • Nishida, T; Yonekura, K; Maeda, K; Shirakawa, E; Taniguchi, T
    “Photoinduced B-H Arylation of N-Heterocyclic Carbene Boranes with Sulfonyl(hetero)arenes”
    ORGANIC LETTERS, 26(50)
    DOI: 10.1021/acs.orglett.4c04181
  • Nishiyama, A; Shimizu, M; Narita, T; Kodera, N; Ozeki, Y; Yokoyama, A; Mayanagi, K; Yamaguchi, T; Hakamata, M; Shaban, AK; Tateishi, Y; Ito, K; Matsumoto, S
    “Dynamic action of an intrinsically disordered protein in DNA compaction that induces mycobacterial dormancy”
    NUCLEIC ACIDS RESEARCH, 52(2)
    DOI: 10.1093/nar/gkad1149
  • Ogoshi, T; Azuma, S; Wada, K; Tamura, Y; Kato, K; Ohtani, S; Kakuta, T; Yamagishi, TA
    “Exciplex Formation by Complexation of an Electron-Accepting Guest in an Electron-Donating Pillar[5]arene Host Liquid”
    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 146(14)
    DOI: 10.1021/jacs.3c14582
  • Ohtani, S; Akine, S; Kato, K; Fa, SX; Shi, TH; Ogoshi, T
    “Silapillar[n]arenes: Their Enhanced Electronic Conjugation and Conformational Versatility”
    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 146(7)
    DOI: 10.1021/jacs.3c12093
  • Ohtani, S; Nakaguchi, K; Kato, K; Ogoshi, T
    “Solid-State Emissive Pillar[6]arene Derivative Having Alternate Methylene and Nitrogen Bridges”
    CHEMISTRY-AN ASIAN JOURNAL, 19(9)
    DOI: 10.1002/asia.202400106
  • Ota, S; Soto, MA; Patrick, BO; Kamal, S; Lelj, F; Maclachlan, MJ
    “π-Extended ligands with dual-binding behavior: hindered rotation unlocks unexpected reactivity in cyclometalated Pt complexes”
    CHEMICAL SCIENCE, 15(36)
    DOI: 10.1039/d4sc04799k
  • Ousaka, N; MacLachlan, MJ; Akine, S
    “Redox-Triggered Reversible Switching between Dynamic and Quasi-static α-Helical Peptides”
    CHEMISTRY-A EUROPEAN JOURNAL, 30(56)
    DOI: 10.1002/chem.202402704
  • Park, J; Kim, Y; Lee, W; Pfeifer, V; Muraveva, V; Beta, C; Lim, S
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    “Nanoactuator for Neuronal Optoporation”
    ACS NANO, 18(19)
    DOI: 10.1021/acsnano.4c01672
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    “Characterizing Chemical, Environmental, and Stimulated Subcellular Physical Characteristics of Size-Fractionated PMs Down to PM0.1”
    ENVIRONMENTAL SCIENCE & TECHNOLOGY, 58(28)
    DOI: 10.1021/acs.est.4c01604
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    CHEMICAL COMMUNICATIONS, 60(64)
    DOI: 10.1039/d4cc02656j
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    “Non-threaded and rotaxane-type threaded wheel-axle assemblies consisting of dinickel(II) metallomacrocycle and dibenzylammonium axle”
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    “Metabolic Tug-of-War between Glycolysis and Translation Revealed by Biochemical Reconstitution”
    ACS SYNTHETIC BIOLOGY, 13(5)
    DOI: 10.1021/acssynbio.4c00209
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    “Friedel-Crafts Acylation for Accessing Multi-Bridge-Functionalized Large Pillar[n]arenes”
    ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 63(6)
    DOI: 10.1002/anie.202318268
  • Shi, YH; Soto, MA; Li, ZZ; Maclachlan, MJ
    “Tailorable and photochromic multifunctional methyl viologen/cellulose nanocrystal (CNC) films”
    NEW JOURNAL OF CHEMISTRY, 48(23)
    DOI: 10.1039/d4nj01129e
  • Shinohara, S; Uchijima, S; Hirosawa, K; Nagaoka, M; Nakano, M; Nakajima, M; Fukami, T
    “Arylacetamide deacetylase regulates hepatic iron homeostasis to protect against carbon tetrachloride-induced ferroptosis”
    ARCHIVES OF TOXICOLOGY, 98(12)
    DOI: 10.1007/s00204-024-03873-5
  • Shioka, I; Morita, R; Yagasaki, R; Wuergezhen, D; Yamashita, T; Fujiwara, H; Okuda, S
    “Ex vivo SIM-AFM measurements reveal the spatial correlation of stiffness and molecular distributions in 3D living tissue”
    ACTA BIOMATERIALIA, 189
    DOI: 10.1016/j.actbio.2024.09.023
  • Shoulkamy, M.I; Xie, M.-Z; Jiao, C.-L; Mohammed, T.O
    “DNA-protein crosslinks are key to platinum-based chemotherapeutic cytotoxicity”
    CHEMICAL BIOLOGY LETTERS, 11(2)
    DOI: 10.62110/sciencein.cbl.2024.v11.663
  • Sugiyama, K; Sato, F; Komatsu, S; Kamijo, T; Yoshida, K; Kawabe, Y; Nishikawa, H; Fujimura, T; Takahashi, Y; Sato, K
    “Highly sensitive glucose electrochemical sensor using sugar-lectin interactions”
    ELECTROCHEMICAL SCIENCE ADVANCES, 4(5)
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    “High-Speed Atomic Force Microscopy Reveals Fluctuations and Dimer Splitting of the N-Terminal Domain of GluA2 Ionotropic Glutamate Receptor-Auxiliary Subunit Complex”
    ACS NANO, 18(36)
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    “On-Surface Synthesis of Silole and Disila-Cyclooctene Derivatives”
    ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 63(18)
    DOI: 10.1002/anie.202401027
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    “Controlling the optical properties of chiral nematic mesoporous organosilica films with bioadditives”
    NANOSCALE, 16(45)
    DOI: 10.1039/d4nr03326d
  • Taura, D; Minami, A; Mamiya, F; Ousaka, N; Itami, K; Yashima, E
    “Separation of enantiomers of chiral fullerene derivatives through enantioselective encapsulation within an adaptable helical cavity of syndiotactic poly(methyl methacrylate) with helicity memory”
    CHIRALITY, 36(4)
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    “EGFR-V834L combined with L858R mutation reduced afatinib sensitivity and associated to early recurrence in lung cancer”
    TRANSLATIONAL LUNG CANCER RESEARCH, 13(11)
    DOI: 10.21037/tlcr-24-471
  • Teranishi, A; Mori, M; Ichiki, R; Toda, S; Shioi, G; Okuda, S
    “An actin bracket-induced elastoplastic transition determines epithelial folding irreversibility”
    NATURE COMMUNICATIONS, 15(1)
    DOI: 10.1038/s41467-024-54906-7
  • Timoshenko, RV; Gorelkin, PV; Vaneev, AN; Krasnovskaya, OO; Akasov, RA; Garanina, AS; Khochenkov, DA; Iakimova, TM; Klyachko, NL; Abakumova, TO; Shashkovskaya, VS; Chaprov, KD; Makarov, AA; Mitkevich, VA; Takahashi, Y; Edwards, CRW; Korchev, YE; Erofeev, AS
    “Electrochemical Nanopipette Sensor for In Vitro/In Vivo Detection of Cu2+ Ions”
    ANALYTICAL CHEMISTRY, 96(1)
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  • Togari, Y; Ohtani, S; Kanao, E; Sato, K; Mizuno, M; Kato, K; Mizuta, R; Sasaki, Y; Ogoshi, T
    “Fluorinated Conjugated Microporous Polymers Based on Pillar[n]arenes for Removal of Water Pollutants and Their Cation Selective Adsorption”
    ACS APPLIED MATERIALS & INTERFACES, 16(50)
    DOI: 10.1021/acsami.4c17877
  • Tuo, D; Fa, S; Tanaka, S; Shimada, T; Yamashita, M; Togari, Y; Ohtani, S; Kato, K; Urayama, K; Zhang, QY; Yasuhara, K; Ogoshi, T
    “Helical-Sense Matching Facilitates Supramolecular Copolymerization of Helical-Chiral Pillar[5]arenes”
    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 146(46)
    DOI: 10.1021/jacs.4c10765
  • Uchida, K; Masuda, T; Hara, S; Matsuo, Y; Liu, YW; Aoki, H; Asano, Y; Miyata, K; Fukuma, T; Ono, T; Isoyama, T; Takai, M
    “Stability Enhancement by Hydrophobic Anchoring and a Cross-Linked Structure of a Phospholipid Copolymer Film for Medical Devices”
    ACS APPLIED MATERIALS & INTERFACES, 16(30)
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  • Ueno, M; Sugiyama, H; Li, F; Nishimura, T; Arakawa, H; Chen, X; Cheng, XX; Takeuchi, S; Takeshita, Y; Takamura, T; Miyagi, S; Toyama, T; Soga, T; Masuo, Y; Kato, Y; Nakamura, H; Tsujiguchi, H; Hara, A; Tajima, A; Noguchi-Shinohara, M; Ono, K; Kurayoshi, K; Kobayashi, M; Tadokoro, Y; Kasahara, A; Shoulkamy, MI; Maeda, K; Ogoshi, T; Hirao, A
    “A Supramolecular Biosensor for Rapid and High-Throughput Quantification of a Disease-Associated Niacin Metabolite”
    ANALYTICAL CHEMISTRY, 96(36)
    DOI: 10.1021/acs.analchem.4c02653
  • Usuda, J; Yagyu, K; Tanaka, H; Hori, M; Ishikawa, K; Takahashi, Y
    “Nanoscale visualization of the anti-tumor effect of a plasma-activated Ringer’s lactate solution”
    FARADAY DISCUSSIONS, 257(0)
    DOI: 10.1039/d4fd00116h
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    “In vitro/In vivo oxygen electrochemical nanosensor for bioanalysis”
    JOURNAL OF ELECTROANALYTICAL CHEMISTRY, 975
    DOI: 10.1016/j.jelechem.2024.118796
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    “Emergence of Exotic Spin Texture in Supramolecular Metal Complexes on a 2D Superconductor”
    PHYSICAL REVIEW LETTERS, 133(23)
    DOI: 10.1103/PhysRevLett.133.236203
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    “Self-Inclusion Complexation of Electron-Accepting Guest into Electron-Donating Cyclic Host by Photoexcitation”
    ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 63(26)
    DOI: 10.1002/anie.202404409
  • Wada, K; Ohtani, S; Kato, K; Ogoshi, T
    “Stable planar chirality of arylated pillar[6]arene and its thermal response”
    TETRAHEDRON LETTERS, 135
    DOI: 10.1016/j.tetlet.2023.154891
  • Wang, D; Nakayama, M; Hong, CP; Oshima, H; Oshima, M
    “Gain-of-Function p53 Mutation Acts as a Genetic Switch for TGFβ Signaling-Induced Epithelial-to-Mesenchymal Transition in Intestinal Tumors”
    CANCER RESEARCH, 84(1)
    DOI: 10.1158/0008-5472.CAN-23-1490
  • Wang, D; Woodcock, E; Yang, X; Nishikawa, H; Sviderskaya, E; Oshima, M; Edwards, C; Zhang, YJ; Korchev, Y
    “Exploration of individual colorectal cancer cell responses to H2O2 eustress using hopping probe scanning ion conductance microscopy”
    SCIENCE BULLETIN, 69(12)
    DOI: 10.1016/j.scib.2024.04.004
  • Wu, N; Aapro, M; Jestilä, JS; Drost, R; García, MM; Torres, T; Xiang, FF; Cao, N; He, ZJ; Bottari, G; Liljeroth, P; Foster, AS
    “Precise Large-Scale Chemical Transformations on Surfaces: Deep Learning Meets Scanning Probe Microscopy with Interpretability”
    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 147(1)
    DOI: 10.1021/jacs.4c14757
  • Xu, YT; Ackroyd, AJ; Momeni, A; Oudah, M; Maclachlan, MJ
    “Magnetic field-responsive graphene oxide photonic liquids”
    NANOSCALE HORIZONS, 9(2)
    DOI: 10.1039/d3nh00412k
  • Yanagawa, K; Kuma, A; Hamasaki, M; Kita, S; Yamamuro, T; Nishino, K; Nakamura, S; Omori, H; Kaminishi, T; Oikawa, S; Kato, Y; Edahiro, R; Kawagoe, R; Taniguchi, T; Tanaka, Y; Shima, T; Tabata, K; Iwatani, M; Bekku, N; Hanayama, R; Okada, Y; Akimoto, T; Kosako, H; Takahashi, A; Shimomura, I; Sakata, Y; Yoshimori, T
    “The Rubicon-WIPI axis regulates exosome biogenesis during ageing”
    NATURE CELL BIOLOGY, 26(9)
    DOI: 10.1038/s41556-024-01481-0
  • Yanagiya, R; Miyatake, Y; Watanabe, N; Shimizu, T; Kanamori, A; Ueno, M; Okabe, S; Carreras, J; Nakayama, S; Hasegawa, A; Kameda, K; Kamakura, T; Nakagawa, S; Yamauchi, T; Maeda, T; Ishii, K; Matsuura, T; Handa, H; Hirao, A; Ishizawa, K; Onizuka, M; Mashima, T; Nakamura, N; Ando, K; Kotani, A
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    LEUKEMIA, 38(8)
    DOI: 10.1038/s41375-024-02296-6
  • Ye, ZJ; Galvanetto, N; Puppulin, L; Pifferi, S; Flechsig, H; Arndt, M; Triviño, CAS; Di Palma, M; Guo, SF; Vogel, H; Menini, A; Franz, CM; Torre, V; Marchesi, A
    “Structural heterogeneity of the ion and lipid channel TMEM16F”
    NATURE COMMUNICATIONS, 15(1)
    DOI: 10.1038/s41467-023-44377-7
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    ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS, 755
    DOI: 10.1016/j.abb.2024.109964
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    EMBO JOURNAL, 43(18)
    DOI: 10.1038/s44318-024-00192-4
  • Yurtsever, A; Hirata, K; Kojima, R; Miyazawa, K; Miyata, K; Kesornsit, S; Zareie, H; Sun, LH; Maeda, K; Sarikaya, M; Fukuma, T
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    SMALL, 20(25)
    DOI: 10.1002/smll.202400653
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    “Haematopoietic regeneration by HLA-A*0206-deficient clones in severe aplastic anaemia without definitive immunosuppressive treatment”
    BRITISH JOURNAL OF HAEMATOLOGY, 205(5)
    DOI: 10.1111/bjh.19712
  • Zhang, X; Li, D; Tan, C.C.H; Hanindita, F; Hamamoto, Y; Foster, A.S; Kawai, S; Ito, S
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    NATURE SYNTHESIS, 3(10)
    DOI: 10.1038/s44160-024-00595-5
  • Zhang, XF; Zhang, XQ; Li, MK; Jiao, SP; Zhang, YJ
    “Monitoring Partial EMT Dynamics through Cell Mechanics Using Scanning Ion Conductance Microscopy”
    ANALYTICAL CHEMISTRY, 96(37)
    DOI: 10.1021/acs.analchem.4c02612
  • Zhong, C; Arai, S; Okada, Y
    “Development of fluorescence lifetime biosensors for ATP, cAMP, citrate, and glucose using the mTurquoise2-based platform”
    CELL REPORTS METHODS, 4(11)
    DOI: 10.1016/j.crmeth.2024.100902

Review

  • Ando, T; Fukuda, S; Ngo, KX; Flechsig, H
    “High-Speed Atomic Force Microscopy for Filming Protein Molecules in Dynamic Action”
    ANNUAL REVIEW OF BIOPHYSICS, 53
    DOI: 10.1146/annurev-biophys-030722-113353
  • Andrew, LJ; Lizundia, E; MacLachlan, MJ
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    ADVANCED MATERIALS
    DOI: 10.1002/adma.202401560
  • Fukuma, T
    “Visualizing the inside of three-dimensional self-organizing systems by three-dimensional atomic force microscopy”
    JAPANESE JOURNAL OF APPLIED PHYSICS, 63(1)
    DOI: 10.35848/1347-4065/acf721
  • Grossmann, R; Bort, LS; Moldenhawer, T; Stange, M; Panah, SS; Metzler, R; Beta, C
    “Non-Gaussian Displacements in Active Transport on a Carpet of Motile Cells”
    PHYSICAL REVIEW LETTERS, 132(8)
    DOI: 10.1103/PhysRevLett.132.088301
  • Hwang, DW; Maekiniemi, A; Singer, RH; Sato, H
    “Real-time single-molecule imaging of transcriptional regulatory networks in living cells”
    NATURE REVIEWS GENETICS, 25(4)
    DOI: 10.1038/s41576-023-00684-9
  • Ikliptikawati, DK; Makiyama, K; Hazawa, M; Wong, RW
    “Unlocking the Gateway: The Spatio-Temporal Dynamics of the p53 Family Driven by the Nuclear Pores and Its Implication for the Therapeutic Approach in Cancer”
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    DOI: 10.3390/ijms25137465
  • Ishibashi, K; Hirata, E
    “Multifaceted interactions between cancer cells and glial cells in brain metastasis”
    CANCER SCIENCE, 115(9)
    DOI: 10.1111/cas.16241
  • Kono, Y; Shimi, T
    “Crosstalk between mitotic reassembly and repair of the nuclear envelope”
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    DOI: 10.1080/19491034.2024.2352203
  • Nagaoka, M; Sakai, Y; Nakajima, M; Fukami, T
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  • Sajidah, ES; Lim, K; Hazawa, M; Wong, RW
    “Nanoimaging of SARS-CoV-2 viral invasion toward the nucleus and genome”
    CELL REPORTS PHYSICAL SCIENCE, 5(9)
    DOI: 10.1016/j.xcrp.2024.102111
  • Sakai, K; Sato, H; Matsumoto, K
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    ISRAEL JOURNAL OF CHEMISTRY, 64(8-9)
    DOI: 10.1002/ijch.202300163
  • Takakura, Y; Hanayama, R; Akiyoshi, K; Futaki, S; Hida, K; Ichiki, T; Ishii-Watabe, A; Kuroda, M; Maki, K; Miura, Y; Okada, Y; Seo, N; Takeuchi, T; Yamaguchi, T; Yoshioka, Y
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    PHARMACEUTICAL RESEARCH, 41(8)
    DOI: 10.1007/s11095-024-03757-4
  • Zama, N; Toda, S
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    INFLAMMATION AND REGENERATION, 44(1)
    DOI: 10.1186/s41232-024-00327-4

Letter

  • Kotani, H; Yamano, T; Boucher, JC; Sato, S; Sakaguchi, H; Fukuda, K; Nishiyama, A; Yamashita, K; Ohtsubo, K; Takeuchi, S; Nishiuchi, T; Oshima, H; Oshima, M; Davila, ML; Yano, S
    “Comprehensive antitumor immune response boosted by dual inhibition of SUMOylation and MEK in MYC-expressing KRAS-mutant cancers”
    EXPERIMENTAL HEMATOLOGY & ONCOLOGY, 13(1)
    DOI: 10.1186/s40164-024-00563-x

Editorial Material

  • Lim, K; Hazawa, M; Wong, RW
    “Crafty mimicry grants nuclear pore entry to HIV”
    CELL HOST & MICROBE, 32(4)
    DOI: 10.1016/j.chom.2024.03.004

Book

  • Moldenhawer, T; Schindler, D; Holschneider, M; Huisinga, W; Beta, C
    “A Hands-on Guide to AmoePy — a Python-Based Software Package to Analyze Cell Migration Data”
    METHODS IN MOLECULAR BIOLOGY, 2828
    DOI: 10.1007/978-1-0716-4023-4_13
  • Morita, A; Nakayama, M; Oshima, H; Oshima, M
    “An In Vivo Metastasis Model Using Genotype-Defined Tumor Organoids”
    METHODS IN MOLECULAR BIOLOGY, 2828
    DOI: 10.1007/978-1-0716-4023-4_6
  • Pfeifer, V; Muraveva, V; Beta, C
    “Flagella and Cell Body Staining of Bacteria with Fluorescent Dyes”
    METHODS IN MOLECULAR BIOLOGY, 2828
    DOI: 10.1007/978-1-0716-4023-4_8

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    CHEMISTRY-A EUROPEAN JOURNAL, 30(4)
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    MACROMOLECULAR RAPID COMMUNICATIONS, 46(7)
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Review

  • Cheng, XX; Zhang, W
    “Polymerization-induced Chiral Self-assembly for the In situ Construction, Modulation, Amplification and Applications of Asymmetric Suprastructures”
    ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 63(52)
    DOI: 10.1002/anie.202414332
  • Liu, DD; Zhao, JY; Zhao, X; Shi, SY; Li, S; Wang, Y; Song, QP; Cheng, XX; Zhang, W
    “Chiral polymer micro/nano-objects: evolving preparation strategies in heterogeneous polymerization”
    SCIENCE CHINA-CHEMISTRY
    DOI: 10.1007/s11426-024-2443-0
  • Yamamura, K; Hara, J; Watanabe, S; Kobayashi, T; Kase, K; Takeda, Y; Terada, N; Koba, H; Tambo, Y; Ohkura, N; Abo, M; Yano, S
    “Patients with idiopathic pulmonary fibrosis and refractory cough have traction bronchiectasis and distorted airway architecture: a retrospective case review study”
    JOURNAL OF THORACIC DISEASE, 16(3)
    DOI: 10.21037/jtd-23-1443